Previously I've stated that one can use old compilations of emulators with the EZ-Omega without issue. This, however, is sadly not the case. One of the last thing various Loopy/FluBBa based emulators do is writeconfig(); right before exit. This obviously has a non-negligible probability of changing the SRAM at a point where SRAM writes should be avoided. I noticed only after seeing the EZ Omega kernel source was patching the Goomba Color 2014-12-14 binary. I'm not certain if they also...
Possible EZ Omega Corruption Source
Possible EZ Omega Corruption Source