EZ Flash Omega DE - Goomba Settings don't save

There has been an issue when using Goomba Color where it doesn't save the settings for games. For instance, with the Legend of Zelda, Oracle of Ages/Seasons games, they have a GBA enhancement to them, however in order to use them, I always have to change the setting to "Identify as GBA", and then reset in the IGM to get it to reload.

I've looked over some of the source, and apparently Goomba is designed to be able to save the config into the sram file, however it looks like it's coded to...

EZ Flash Omega DE - Goomba Settings don't save